IMIS - Marine Research Groups

Dr Eng. Boschker, Eric
ORCID Personal home page ResearcherID

Institute
Publications (88)
Projects (5)
Datasets (3)

Koninklijk Nederlands Instituut voor Onderzoek der Zee; Marine Microbiology and Biogeochemistry (MMB), more

Function: Senior Researcher
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Tel.: +31-(0)113-57 74 93
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Biogeochemische cycli in open oceanen, kustzeeën en estuaria, more
Food, oxygen and bioturbation: an experimental study of meiofauna community structure, more
The balance between heterotrophic and autotophic processes in the Scheldt estuary: consequences for the carbon and nitrogen cycles, more
Tidal freshwater marshes as processors and sinks of nitrogen in estuaries: a whole ecosystem 15N-labeling study, more
Zoetwaterschorren als "sinks" voor stikstof: dynamiek van het benthische compartiment en het onderzoek naar hun rol in estuariene stikstofretentie, more

Boschker E., Stal L. 2006: PLFA-RNA biomarker study. Netherlands Institute of Ecology; Centre for Estuarine and Marine Ecology, Netherlands. Metadata available at http://mda.nioo.knaw.nl/imis.php?module=dataset&dasid=1211, more
Boschker E., Stal L. 2006: Whole ecosystem 15N labelling study. Netherlands Institute of Ecology; Centre for Estuarine and Marine Ecology, Netherlands. Metadata available at http://mda.nioo.knaw.nl/imis.php?module=dataset&dasid=1208, more
Mag-SIP: Miyatake T., Stal L. 2008: Linking Microbial Community Function to Phylogeny of Sulfate-Reducing Deltaproteobacteria in Marine Sediments. Netherlands Institute of Ecology; Centre for Estuarine and Marine Ecology, Netherlands. Metadata available at http://mda.nioo.knaw.nl/imis.php?module=dataset&dasid=2148, more

A1 Publications (72) [show]
Boschker, H.T.S.; Cook, P.L.M.; Polerecky, L.; Eachambadi, R.T.; Lozano, H.; Hidalgo-Martinez, S.; Khalenkow, D.; Spampinato, V.; Claes, N.; Kundu, P.; Wang, D.; Bals, S.; Sand, K.K.; Cavezza, F.; Hauffman, T.; Bjerg, J.T.; Skirtach, A.G.; Kochan, K.; McKee, M.; Wood, B.; Bedolla, D.; Gianoncelli, A.; Geerlings, N.M.J.; Van Gerven, N.; Remaut, H.; Remaut, H.; Geelhoed, J.S.; Millan-Solsona, R.; Fumagalli, L.; Nielsen, L.P.; Franquet, A.; Manca, J.V.; Gomila, G.; Meysman, F.J.R. (2021). Efficient long-range conduction in cable bacteria through nickel protein wires. Nature Comm. 12: 3996. https://dx.doi.org/10.1038/s41467-021-24312-4, more Eachambadi, R.T.; Boschker, H.T.S.; Franquet, A.; Spampinato, V.; Hidalgo-Martinez, S.; Valcke, R.; Meysman, F.J.R.; Manca, J.V. (2021). Enhanced laterally resolved ToF-SIMS and AFM imaging of the electrically conductive structures in cable bacteria. Anal. Chem. 93(19): 7226-7234. https://dx.doi.org/10.1021/acs.analchem.1c00298, more Geerlings, N.M.J.; Geelhoed, J.S.; Vasquez-Cardenas, D.; Kienhuis, M.V.M.; Hidalgo-Martinez, S.; Boschker, H.T.S.; Middelburg, J.J.; Meysman, F.J.R.; Polerecky, L. (2021). Cell cycle, filament growth and synchronized cell division in multicellular cable bacteria. Front. Microbiol. 12: 620807. https://dx.doi.org/10.3389/fmicb.2021.620807, more Daggers, T.D.; van Oevelen, D.; Herman, P.M.J.; Boschker, H.T.S.; van der Wal, D. (2020). Spatial variability in macrofaunal diet composition and grazing pressure on microphytobenthos in intertidal areas. Limnol. Oceanogr. 65(11): 2819-2834. https://dx.doi.org/10.1002/lno.11554, more Geerlings, N.M.J.; Karman, C.; Trashin, S.; As, K.S.; Kienhuis, M.V.M.; Hidalgo-Martinez, S.; Vasquez-Cardenas, D.; Boschker, H.T.S.; De Wael, K.; Middelburg, J.J.; Polerecky, L.; Meysman, F.J.R. (2020). Division of labor and growth during electrical cooperation in multicellular cable bacteria. Proc. Natl. Acad. Sci. U.S.A. 117(10): 5478-5485. https://dx.doi.org/10.1073/pnas.1916244117, more Vasquez-Cardenas, D.; Meysman, F.J.R.; Boschker, H.T.S. (2020). A cross‐system comparison of dark carbon fixation in coastal sediments. Global Biogeochem. Cycles 34(2): e2019GB006298. https://dx.doi.org/10.1029/2019gb006298, more Grosse, J.; Brussaard, C.P.D.; Boschker, H.T.S. (2019). Nutrient limitation driven dynamics of amino acids and fatty acids in coastal phytoplankton. Limnol. Oceanogr. 64(1): 302-316. https://dx.doi.org/10.1002/lno.11040, more Scoma, A.; Heyer, R.; Rifai, R.; Dandyk, C.; Marshall, I.; Kerckhof, F.-M.; Marietou, A.; Boshker, H.T.S.; Meysman, F.J.R.; Malmos, K.G.; Vosegaard, T.; Vermeir, P.; Banat, I.M.; Benndorf, D.; Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME J. 13(4): 1004-1018. https://dx.doi.org/10.1038/s41396-018-0324-5, more Bjerg, J.T.; Boschker, H.T.S.; Larsen, S.; Berry, D.; Schmid, M.; Millo, D.; Tataru, P.; Meysman, F.J.R.; Wagner, M.; Nielsen, L.P.; Schramm, A. (2018). Long-distance electron transport in individual, living cable bacteria. Proc. Natl. Acad. Sci. U.S.A. 115(22): 5786-5791. https://dx.doi.org/10.1073/pnas.1800367115, more Burian, A.; Grosse, J.; Winder, M.; Boschker, H.T.S. (2018). Nutrient deficiencies and the restriction of compensatory mechanisms in copepods. Funct. Ecol. 32(3): 636-647. https://doi.org/10.1111/1365-2435.13016, more Cornelissen, R.; Bøggild, A.; Eachambadi, R.T.; Koning, R.I.; Kremer, A.; Hidalgo-Martinez, S.; Zetsche, E.M.; Damgaard, L.R.; Bonné, R.; Drijkoningen, J.; Geelhoed, J.S.; Boesen, T.; Boschker, H.T.S.; Valcke, R.; Nielsen, L.P.; D'Haen, J.; Manca, J.V.; Meysman, F.J.R. (2018). The cell envelope structure of cable bacteria. Front. Microbiol. 9: 13. https://dx.doi.org/10.3389/fmicb.2018.03044, more Moerdijk-Poortvliet, T.C.W.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Production and consumption of extracellular polymeric substances in an intertidal diatom mat. Mar. Ecol. Prog. Ser. 592: 77-95. https://dx.doi.org/10.3354/meps12481, more Moerdijk-Poortvliet, T.C.W.; van Breugel, P.; Sabbe, K.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Seasonal changes in the biochemical fate of carbon fixed by benthic diatoms in intertidal sediments. Limnol. Oceanogr. 63(2): 550-569. https://dx.doi.org/10.1002/lno.10648, more Vasquez Cardenas, D.; Meire, L.; Sørensen, H.L.; Glud, R.N.; Meysman, F.J.R.; Boschker, H.T.S. (2018). Bacterial chemoautotrophic reoxidation in sub-Arctic sediments: a seasonal study in Kobbefjord, Greenland. Mar. Ecol. Prog. Ser. 601: 33-39. https://doi.org/10.3354/meps12669, more Burdorf, L.D.W.; Tramper, A.; Seitaj, D.; Meire, L.; Hidalgo-Martinez, S.; Zetsche, E.-M.; Boschker, H.T.S.; Meysman, F.J.R. (2017). Long-distance electron transport occurs globally in marine sediments. Biogeosciences 14(3): 683-701. https://dx.doi.org/10.5194/bg-14-683-2017, more Grosse, J.; Burson, A.; Stomp, M.; Huisman, J.; Boschker, H.T.S. (2017). From Ecological Stoichiometry to Biochemical Composition: Variation in N and P Supply Alters Key Biosynthetic Rates in Marine Phytoplankton. Front. Microbiol. 8: 1299. https://dx.doi.org/10.3389/fmicb.2017.01299, more Grosse, J.; van Breugel, P.; Brussaard, C.P.D.; Boschker, H.T.S. (2017). A biosynthesis view on nutrient stress in coastal phytoplankton. Limnol. Oceanogr. 62(2): 490-506. https://dx.doi.org/10.1002/lno.10439, more Lipsewers, Y.A.; Vasquez Cardenas, D.; Seitaj, D.; Schauer, R.; Hidalgo-Martinez, S.; Sinninghe Damsté, J.S.; Meysman, F.J.R.; Villanueva, L.; Boschker, H.T.S. (2017). Impact of seasonal hypoxia on activity and community structure of chemolithoautotrophic bacteria in a coastal sediment. Appl. Environ. Microbiol. 83(10): e03517-16. https://dx.doi.org/10.1128/aem.03517-16, more Pascal, P.-Y.; Gros, O.; Boschker, H.T.S. (2016). Temporal fluctuations in the trophic role of large benthic sulfur bacteria in mangrove sediment. Food Webs 7: 20-28. dx.doi.org/10.1016/j.fooweb.2016.04.001, more Vasquez Cardenas, D.; Organo Quintana, C.; Meysman, F.J.R.; Kristensen, E.; Boschker, H.T.S. (2016). Species-specific effects of two bioturbating polychaetes on sediment chemoautotrophic bacteria. Mar. Ecol. Prog. Ser. 549: 55-68. dx.doi.org/10.3354/meps11679, more Grosse, J.; Van Breugel, P.; Boschker, H.T.S. (2015). Tracing carbon fixation in phytoplankton—compound specific and total ¹³C incorporation rates. Limnol. Oceanogr., Methods 13(6): 288-302. dx.doi.org/10.1002/lom3.10025, more Koopmans, M.; van Rijswijk, P.; Boschker, H.T.S.; Houtekamer, M.; Martens, D.; Wijffels, R.H. (2015). Seasonal Variation of Fatty Acids and Stable Carbon Isotopes in Sponges as Indicators for Nutrition: Biomarkers in Sponges Identified. Mar. Biotechnol. 17(1): 43-54. dx.doi.org/10.1007/s10126-014-9594-8, more Moerdijk-Poortvliet, T.C.W.; Schierbeek, H.; Houtekamer, M.; van Engeland, T.; Derrien, D.; Stal, L.J.; Boschker, H.T.S. (2015). Comparison of gas chromatography/isotope ratio mass spectrometry and liquid chromatography/isotope ratio mass spectrometry for carbon stable-isotope analysis of carbohydrates. Rapid Comm. Mass Spectrom. 29: 1205-1214. dx.doi.org/10.1002/rcm.7217, more Pascal, P.-Y.; Bellemare, C.; Sterrer, W.; Boschker, H.T.S.; Gonzalez-Rizzo, S.; Gros, O. (2015). Diet of Haplognathia ruberrima (Gnathostomulida) in a Caribbean marine mangrove. Mar. Ecol. (Berl.) 36: 246-257. dx.doi.org/10.1111/maec.12296, more Steger, K.; Premke, K.; Gudasz, C.; Boschker, H.T.S.; Tranvik, L.J. (2015). Comparative study on bacterial carbon sources in lake sediments: the role of methanotrophy. Aquat. Microb. Ecol. 76: 39–47. dx.doi.org/10.3354/ame01766, more Vasquez-Cardenas, D.; van de Vossenberg, J.; Polerecky, L.; Malkin, S.Y.; Schauer, R.; Hidalgo-Martinez, S.; Confurius-Guns, V.; Middelburg, J.J.; Meysman, F.J.R.; Boschker, H.T.S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. ISME J. 9(9): 1966-1978. dx.doi.org/10.1038/ismej.2015.10, more Boschker, H.T.S.; Vasquez-Cardenas, D.; Bolhuis, H.; Moerdijk-Poortvliet, T.C.W.; Moodley, L. (2014). Chemoautotrophic Carbon Fixation Rates and Active Bacterial Communities in Intertidal Marine Sediments. PLoS One 9(7): e101443 1-12. http://dx.doi.org/10.1371/journal.pone.0101443, more Derrien, D.; Plain, C.; Courty, P.-E.; Gelhage, L.; Moerdijk-Poortvliet, T.C.W.; Thomas, F; Versini, A.; Zeller, B.; Koutika, L.-S.; Boschker, H.T.S.; Epron, D. (2014). Does the addition of labile substrate destabilise old soil organic matter? Soil Biol. Biochem. 76: 149-160. http://dx.doi.org/10.1016/j.soilbio.2014.04.030, more Kunihiro, T.; Veuger, B.; Vasquez Cardenas, D.; Pozzato, L.; Le Guitton, M.; Moriya, K.; Kuwae, M.; Omori, K.; Boschker, H.T.S.; Van Oevelen, D. (2014). Phospholipid-Derived Fatty Acids and Quinones as Markers for Bacterial Biomass and Community Structure in Marine Sediments. PLoS One 9(4): e96219. dx.doi.org/10.1371/journal.pone.0096219, more Malkin, S.Y.; Rao, A.M.F.; Seitaj, D.; Vasquez-Cardenas, D.; Zetsche, E.-M.; Hidalgo-Martinez, S.; Boschker, H.T.S.; Meysman, F.J.R. (2014). Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor. ISME J. 8(9): 1843–1854. https://dx.doi.org/10.1038/ismej.2014.41, more Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method. Limnol. Oceanogr. 59(4): 1275-1287. http://dx.doi.org/10.4319/lo.2014.59.4.1275, more Moerdijk-Poortvliet, T.C.W.; Brasser, J.; de Ruiter, G.; Houtekamer, M.; Bolhuis, H.; Stal, L.J.; Boschker, H.T.S. (2014). A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry. Rapid Comm. Mass Spectrom. 28(12): 1401-1411. dx.doi.org/10.1002/rcm.6919, more Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). LC/IRMS analysis: A powerful technique to trace carbon flow in microphytobenthic communities in intertidal sediments. J. Sea Res. 92: 19–25. dx.doi.org/10.1016/j.seares.2013.10.002, more Pascal, P.-Y.; Dubois, S.; Boschker, H.T.S.; Gros, O. (2014). Trophic role of large benthic sulfur bacteria in mangrove sediment . Mar. Ecol. Prog. Ser. 516: 127-138 . dx.doi.org/10.3354/meps11035 , more Prenafeta Boldú, F.X.; Summerbell, R.C.; de Boer, W.; Boschker, H.T.S.; Gamsformerly, W. (2014). Biodiversity and ecology of soil fungi in a primary succession of a temperate coastal dune system. Nova Hedwigia 99(3-4): 347-372. dx.doi.org/10.1127/0029-5035/2014/0203, more Drigo, B.; Kowalchuk, G.A.; Knapp, B.A.; Pijl, A.S.; Boschker, H.T.S.; van Veen, J.A. (2013). Impacts of 3 years of elevated atmospheric CO₂ on rhizosphere carbon flow and microbial community dynamics. Glob. Chang. Biol. 19(2): 621-636. dx.doi.org/10.1111/gcb.12045, more Labrenz, M.; Grote, J.; Mammitzsch, K.; Boschker, H.T.S.; Laue, M.; Jost, G.; Glaubitz, S.; Jürgens, K. (2013). Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerantepsilonproteobacterium isolated from a pelagicredoxcline, and an emended description of the genus Sulfurimonas. Int. J. Syst. Evol. Microbiol. 63: 4141–4148. http://dx.doi.org/10.1099/ijs.0.048827-0, more Miyatake, T.; MacGregor, B.J.; Boschker, H.T.S. (2013). Depth-Related Differences in Organic Substrate Utilization by Major Microbial Groups in Intertidal Marine Sediment. Appl. Environ. Microbiol. 79(1): 389-392. dx.doi.org/10.1128/AEM.02027-12, more Pascal, P.-Y.; Fleeger, J.W.; Boschker, H.T.S.; Mitwally, H.M.; Johnson, D.S. (2013). Response of the benthic food web to short- and long-term nutrient enrichment in saltmarsh mudflats. Mar. Ecol. Prog. Ser. 474: 27-41. dx.doi.org/10.3354/meps10090, more Van Oostende, N.; Moerdijk-Poortvliet, T.C.W.; Boschker, H.T.S.; Vyverman, W.; Sabbe, K. (2013). Release of dissolved carbohydrates by Emiliania huxleyi and formation of transparent exopolymer particles depend on algal life cycle and bacterial activity. Environ. Microbiol. 15(5): 1514-1531. http://dx.doi.org/10.1111/j.1462-2920.2012.02873.x, more Hannula, S.E.; Boschker, H.T.S.; de Boer, W.; van Veen, J.A. (2012). ¹³C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline. New Phytol. 194(3): 784-799. dx.doi.org/10.1111/j.1469-8137.2012.04089.x, more Dijkman, N.A.; Boschker, H.T.S.; Stal, L.J.; Kromkamp, J.C. (2010). Composition and heterogeneity of the microbial community in a coastal microbial mat as revealed by the analysis of pigments and phospholipid-derived fatty acids. J. Sea Res. 63(1): 62-70. http://dx.doi.org/10.1016/j.seares.2009.10.002, more Dijkman, N.A.; Boschker, H.T.S.; Middelburg, J.J.; Kromkamp, J.C. (2009). Group-specific primary production based on stable-isotope labeling of phospholipid-derived fatty acids. Limnol. Oceanogr., Methods 7: 612-625. dx.doi.org/10.4319/lom.2009.7.612, more Gribsholt, B.; Veuger, B.; Tramper, A.; Middelburg, J.J.; Boschker, H.T.S. (2009). Long-term ¹⁵N-nitrogen retention in tidal freshwater marsh sediment: elucidating the microbial contribution. Limnol. Oceanogr. 54(1): 13-22. https://dx.doi.org/10.4319/lo.2009.54.1.0013, more Miyatake, T.; MacGregor, B.J.; Boschker, E. (2009). Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA. Appl. Environ. Microbiol. 75(15): 4927-4935. https://dx.doi.org/10.1128/AEM.00652-09, more Caramujo, M.J.; Boschker, H.T.S.; Admiraal, W. (2008). Fatty acid profiles of algae mark the development and composition of harpacticoid copepods. Freshwat. Biol. 53(1): 77-90. https://dx.doi.org/10.1111/j.1365-2427.2007.01868.x, more Drigo, B.; Kowalchuk, G.A.; Yergeau, E.; Bezemer, T.M.; Boschker, H.T.S.; van Veen, J.A. (2007). Impact of elevated carbon dioxide on the rhizosphere communities of Carex arenaria and Festuca rubra. Glob. Chang. Biol. 13(11): 2396-2410. https://dx.doi.org/10.1111/j.1365-2486.2007.01445.x, more Gribsholt, B.; Struyf, E.; Tramper, A.; De Brabandere, L.; Brion, N.; van Damme, S.; Meire, P.; Dehairs, F.; Middelburg, J.J.; Boschker, H.T.S. (2007). Nitrogen assimilation and short term retention in a nutrient-rich tidal freshwater marsh - a whole ecosystem ¹⁵N enrichment study. Biogeosciences 4(1): 11-26. https://dx.doi.org/10.5194/bg-4-11-2007, more Bouillon, S.; Boschker, H.T.S. (2006). Bacterial carbon sources in coastal sediments: a cross-system analysis based on stable isotope data of biomarkers. Biogeosciences 3(2): 175-185 + suppl., more Gribsholt, B.; Struyf, E.; Tramper, A.; Andersson, M.G.I.; Brion, N.; De Brabandere, L.; Van Damme, S.; Meire, P.; Middelburg, J.J.; Dehairs, F.A.; Boschker, H.T.S. (2006). Ammonium transformation in a nitrogen-rich tidal freshwater marsh. Biogeochemistry 80(3): 289-298, more Huiskes, A.H.L.; Boschker, H.T.S.; Lud, D.; Moerdijk-Poortvliet, T.C.W. (2006). Stable isotope ratios as a tool for assessing changes in carbon and nutrient sources in Antarctic terrestrial ecosystems. Plant Ecology 182(1-2): 79-86. https://dx.doi.org/10.1007/s11258-005-9032-0, more MacGregor, B.J.; Boschker, H.T.S.; Amann, R. (2006). Comparison of rRNA and polar-lipid-derived fatty acid biomarkers for assessment of ¹³C-substrate incorporation by microorganisms in marine sediments. Appl. Environ. Microbiol. 72(8): 5246-5253. https://dx.doi.org/10.1128/aem.00423-06, more Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2006). Tidal marshes and biogenic silica recycling at the land-sea interface. Limnol. Oceanogr. 51(2): 838-846. https://dx.doi.org/10.4319/lo.2006.51.2.0838, more van der Wal, A.; van Veen, J.A.; Smant, W.; Boschker, H.T.S.; Bloem, J.; Kardol, P.; van der Putten, W.H.; de Boer, W. (2006). Fungal biomass development in a chronosequence of land abandonment. Soil Biol. Biochem. 38(1): 51-60. https://dx.doi.org/10.1016/j.soilbio.2005.04.017, more Veuger, B.; van Oevelen, D.; Boschker, H.T.S.; Middelburg, J.J. (2006). Fate of peptidoglycan in an intertidal sediment: An in situ ¹³C-labeling study. Limnol. Oceanogr. 51(4): 1572-1580. http://dx.doi.org/10.4319/lo.2006.51.4.1572, more Yergeau, E.; Bokhorst, S.; Huiskes, A.H.L.; Boschker, H.T.S.; Aerts, R.; Kowalchuk, G.A. (2006). Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient. FEMS Microbiol. Ecol. 59(2): 436-451. https://dx.doi.org/10.1111/j.1574-6941.2006.00200.x, more Boschker, H.T.S.; Kromkamp, J.C.; Middelburg, J.J. (2005). Biomarker and carbon isotopic constraints on bacterial and algal community structure and functioning in a turbid, tidal estuary. Limnol. Oceanogr. 50(1): 70-80. https://dx.doi.org/10.4319/lo.2005.50.1.0070, more Gribsholt, B.; Boschker, H.T.S.; Struyf, E.; Andersson, M.; Tramper, A.; De Brabandere, L.; Van Damme, S.; Brion, N.; Meire, P.; Dehairs, F.; Middelburg, J.J.; Heip, C.H.R. (2005). Nitrogen processing in a tidal freshwater marsh: a whole-ecosystem ¹⁵N labeling study. Limnol. Oceanogr. 50(6): 1945-1959. dx.doi.org/10.4319/lo.2005.50.6.1945, more Moodley, L.; Middelburg, J.J.; Soetaert, K.; Boschker, H.T.S.; Herman, P.M.J.; Heip, C.H.R. (2005). Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments. J. Mar. Res. 63(2): 457-469, more Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Houtekamer, M. (2005). Analysis of ¹⁵N incorporation into D-alanine: a new method for tracing nitrogen uptake by bacteria. Limnol. Oceanogr., Methods 3: 230-240, more Rochelle-Newall, E.; Pizay, M.D.; Middelburg, J.J.; Boschker, H.T.S.; Gattuso, J.P. (2004). Degradation of riverine dissolved organic matter by seawater bacteria. Aquat. Microb. Ecol. 37: 9-22, more Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2004). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a ¹³C tracer experiment. Limnol. Oceanogr. 49(3): 862-878. https://dx.doi.org/10.4319/lo.2004.49.3.0862, more Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Nieuwenhuize, J.; Van Rijswijk, P.; Rochelle-Newall, E.J.; Navarro, N. (2004). Microbial uptake of dissolved organic and inorganic nitrogen in Randers Fjord. Est., Coast. and Shelf Sci. 61(3): 507-515. https://dx.doi.org/10.1016/j.ecss.2004.06.014, more Boschker, H.T.S.; Middelburg, J.J. (2002). Mini review: stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40(2): 85-95, more Boschker, H.T.S.; Middelburg, J.J. (2002). Stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40: 85-95, more de Bie, M.J.M.; Starink, M.; Boschker, H.T.S.; Peene, J.J.; Laanbroek, H.J. (2002). Nitrification in the Schelde estuary: methodological aspects and factors influencing its activity. FEMS Microbiol. Ecol. 42(1): 99-107. https://dx.doi.org/10.1111/j.1574-6941.2002.tb00999.x, more Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M. J.; Heip, C.H.R. (2002). Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 236: 23-29, more Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M.J.; Heip, C.H.R. (2002). Erratum: Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 239: 230, more Boschker, H.T.S.; Wielemaker, A.; Schaub, B.E.M.; Holmer, M. (2000). Limited coupling of macrophyte production and bacterial carbon cycling in the sediments of Zostera spp. meadows. Mar. Ecol. Prog. Ser. 203: 181-189. https://dx.doi.org/10.3354/meps203181, more Middelburg, J.J.; Barranguet, C.; Boschker, H.T.S.; Herman, P.M.J.; Moens, T.; Heip, C.H.R. (2000). The fate of intertidal microphytobenthos carbon: an in situ ¹³C-labeling study. Limnol. Oceanogr. 45(6): 1224-1234. http://dx.doi.org/10.4319/lo.2000.45.6.1224, more Moodley, L.; Boschker, H.T.S.; Middelburg, J.J.; Pel, R.; Herman, P.M.J.; de Deckere, E.; Heip, C.H.R. (2000). Ecological significance of benthic foraminifera: ¹³C labelling experiments. Mar. Ecol. Prog. Ser. 202: 289-295, more Boschker, H.T.S.; de Brouwer, J.F.C.; Cappenberg, T.E. (1999). The contribution of macrophyte-derived organic matter to microbial biomass in salt-marsh sediments: stable carbon isotope analysis of microbial biomarkers. Limnol. Oceanogr. 44(2): 309-319. http://dx.doi.org/10.4319/lo.1999.44.2.0309, more
Peer reviewed publications (2) [show]
Bontes, B.M.; Pel, R.; Ibelings, B.W.; Boschker, H.T.S.; Middelburg, J.J.; Van Donk, E. (2005). The effects of biomanipulation on the biogeochemistry, carbon isotopic composition and pelagic food web relations of a shallow turf lake. Biogeosci. Discuss. 2(4): 997-1031. https://dx.doi.org/10.5194/bgd-2-997-2005, more Bouillon, S.; Boschker, H.T.S. (2005). Bacterial carbon sources in coastal sediments: a cross-system analysis based on stable isotope data of biomarkers. Biogeosci. Discuss. 2(5): 1617-1644 + suppl., more
Book chapters (7) [show]
Moens, T.; Moodley, L.; Steyaert, M.; Van Colen, C.; Van Oevelen, D.; Boschker, H.T.S.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K.; Ysebaert, T.; Vincx, M. (2011). The structure and functional roles of tidal flat meiobenthos, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 171-184, more Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2009). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a ¹³C tracer experiment, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 97-129, more Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2005). Tidal marshes and biogenic silica recycling at the land-sea interface, in: Struyf, E. The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). pp. 75-97, more Boschker, H.T.S. (2004). Linking microbial community structure and functioning: stable isotope (13C) labeling in combination with PLFA analysis, in: Kolwalchuk, G.A. et al. (Ed.) Molecular microbial ecology manual II. pp. 1673-1688, more Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230, more Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230, more Gribsholt, B.; Dehairs, F.A.; Struyf, E.; Boschker, E. (2002). Whole ecosystem ¹⁵N labeling to identify nitrogen cycling in marshes, in: ECSA Local Meeting: ecological structures and functions in the Scheldt Estuary: from past to future, Antwerp, Belgium October 7-10, 2002: abstract book. pp. 25, more
Abstracts (3) [show]
Van Oostende, N.; Boschker, H.T.S.; Middelburg, J.J.; Vyverman, W.; Sabbe, K. (2009). Bacterial influence on the extracellular carbohydrate pool in experimental Emiliania huxleyi blooms, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 6 March 2009: book of abstracts. VLIZ Special Publication, 41: pp. 73, more Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2007). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 282-283, more Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2004). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 118-119, more
Thesis (co-)promotor (4) [show]
Grosse, J. (2016). Resource limitation and the biochemical composition of marine phytoplankton. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-37-6. hdl.handle.net/11245/1.541502, more Moerdijk-Poortvliet, T.C.W. (2016). Carbon cycling in benthic diatom mats: Novel applications of LC/IRMS. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-44-4. 270 pp. hdl.handle.net/11245/1.547921, more Vasquez-Cardenas, D. (2016). Bacterial chemoautotrophy in coastal sediments. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-33-8. 215 pp. hdl.handle.net/11245/1.531841, more Van Oostende, N. (2011). Dynamics of bacteria, phytoplankton and extracellular carbohydrates during blooms of the coccolithophore Emiliania huxleyi. PhD Thesis. Universiteit Gent: Gent. 269 pp., more

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