IMIS - Marine Onderzoeksgroepen

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dr. Van Houdt, Jeroen

Vorig instituut
Publicaties (39)
Project

KU Leuven; Departement Biologie; Ecology, Evolution and Biodiversity Conservation Section; Laboratorium voor Biodiversiteit en Evolutionaire Genomica (LBEG), meer

Fylogeografie van een Holarctische kabeljauwachtige, de kwabaal Lota lota L., op basis van genetische merkers, meer

A1 publicaties (24) [show]
Nielsen, E.E.; Cariani, A.; Aoidh, E.M.; Maes, G.E.; Milano, I.; Ogden, R.; Taylor, M.; Hemmer-Hansen, J.; Babbucci, M.; Bargelloni, L.; Bekkevold, D.; Diopere, E.; Grenfell, L.; Helyar, S.; Limborg, M.T.; Martinsohn, J.T.; McEwing, R.; Panitz, F.; Patarnello, T.; Tinti, F.; Van Houdt, J.K.J.; Volckaert, F.A.M.; Waples, R.S.; FishPopTrace Consortium; Carvalho, G.R. (2019). Author correction: gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Comm. 10: 5325. https://dx.doi.org/10.1038/s41467-019-13399-5, meer Diopere, E.; Vandamme, S.G.; Hablützel, P.I.; Cariani, A.; Van Houdt, J.; Rijnsdorp, A.; Tinti, F.; FishPopTrace Consortium; Volckaert, F.A.M.; Maes, G.E. (2018). Seascape genetics of a flatfish reveals local selection under high levels of gene flow. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 75(2): 675-689. https://dx.doi.org/10.1093/icesjms/fsx160, meer Maroso, F.; Hillen, J.E.J.; Pardo, B.G.; Gkagkavouzis, K.; Coscia, I.; Hermida, M.; Franch, R.; Hellemans, B.; Van Houdt, J.; Simionati, B.; Taggart, J.B.; Nielsen, E.E.; Maes, G.; Ciavaglia, S.A.; Webster, L.M.I.; Volckaert, F.A.M.; Martínez, P.; Bargelloni, L.; Ogden, R.; AquaTrace Consortium (2018). Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Marine Genomics 39: 64-72. https://dx.doi.org/10.1016/j.margen.2018.02.002, meer Puncher, G.N.; Cariani, A.; Maes, G.E.; Van Houdt, J.; Herten, K.; Cannas, R.; Rodriguez-Ezpeleta, N.; Albaina, A.; Estonba, A.; Lutcavage, M.; Hanke, A.; Rooker, J.; Franks, J.S.; Quattro, J.M.; Basilone, G.; Fraile, I.; Laconcha, U.; Goni, N.; Kimoto, A.; Macías, D.; Alemany, F.; Deguara, S.; Zgozi, S.W.; Garibaldi, F.; Oray, I.K.; Karakulak, F.S.; Abid, N.; Santos, M.N.; Addis, P.; Arrizabalaga, H.; Tinti, F. (2018). Spatial dynamics and mixing of bluefin tuna in the Atlantic Ocean and Mediterranean Sea revealed using next-generation sequencing. Mol. Ecol. Resour. 18(3): 620-638. https://dx.doi.org/10.1111/1755-0998.12764, meer Helyar, S.J.; Limborg, M.T.; Bekkevold, D.; Babbucci, M.; van Houdt, J.; Maes, G.E.; Bargelloni, L.; Nielsen, R.O.; Taylor, M.I.; Ogden, R.; Cariani, A.; Carvalho, G.R.; Panitz, F.; FishPopTrace Consortium (2012). SNP discovery using next generation transcriptomic sequencing in Atlantic Herring (Clupea harengus). PLoS One 7(8): 1-11. dx.doi.org/10.1371/journal.pone.0042089, meer Nielsen, E.E.; Cariani, A.; Mac Aoidh, E.; Maes, G.E.; Milano, I.; Ogden, R.; Taylor, M.; Hemmer-Hansen, J.; Babbucci, M.; Bargelloni, L.; Bekkevold, D.; Diopere, E.; Grenfell, L.; Helyar, S.; Limborg, M.T.; Martinsohn, J. Th.; McEwing, R.; Panitz, F.; Patarnello, T.; Tinti, F.; Van Houdt, J.K.J.; Volckaert, F.A.M.; Waples, R.S.; FishPopTrace Consortium; Carvalho, G.R. (2012). Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Comm. 3(851): 6 pp. dx.doi.org/10.1038/ncomms1845, meer Van Belleghem, S.M.; Roelofs, D.; Van Houdt, J.; Hendrickx, F. (2012). De novo transcriptome assembly and SNP discovery in the wing polymorphic salt marsh beetle Pogonus chalceus (Coleoptera, Carabidae). PLoS One 7(8): 1-13. dx.doi.org/10.1371/journal.pone.0042605, meer Van de Putte, A.; Janko, K.; Kasparova, E.; Maes, G.E.; Rock, J.; Koubbi, P.; Volckaert, F.A.M.; Choleva, L.; Fraser, K.P.P.; Smykla, J.; Van Houdt, J.K.J.; Marshall, C. (2012). Comparative phylogeography of three trematomid fishes reveals contrasting genetic structure patterns in benthic and pelagic species. Marine Genomics 8: 23-34. http://dx.doi.org/10.1016/j.margen.2012.05.002, meer Van De Putte, A.P.; Van Houdt, J.K.J.; Maes, G.E.; Hellemans, B.; Collins, M.A.; Volckaert, F.A.M. (2012). High genetic diversity and connectivity in a common mesopelagic fish of the Southern Ocean: the myctophid Electrona antarctica. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 59-60: 199-207. dx.doi.org/10.1016/j.dsr2.2011.05.011, meer Volckaert, F.A.M.; Hellemans, B.; Batargias, C.; Louro, B.; Massault, C.; Van Houdt, J.K.J.; Haley, C.; de Koning, D.-J.; Canário, A.V.M. (2012). Heritability of cortisol response to confinement stress in European sea bass Dicentrarchus labrax. Genet. Sel. Evol. 44(1): 15. http://dx.doi.org/10.1186/1297-9686-44-15, meer Janko, K.; Marshall, C.; Musilova, Z.; Van Houdt, J.K.J.; Couloux, A.; Cruaud, C.; Lecointre, G. (2011). Multilocus analyses of an Antarctic fish species flock (Teleostei, Notothenioidei, Trematominae): phylogenetic approach and test of the early-radiation event. Mol. Phylogenet. Evol. 60(3): 305-316. https://dx.doi.org/10.1016/j.ympev.2011.03.008, meer Larmuseau, M.H.D.; Huyse, T.; Vancampenhout, K.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2010). High molecular diversity in the rhodopsin gene in closely related goby fishes: a role for visual pigments in adaptive speciation? Mol. Phylogenet. Evol. 55(2): 689-698. dx.doi.org/10.1016/j.ympev.2009.10.007, meer Larmuseau, M.H.D.; Vancampenhout, K.; Raeymaekers, J.A.M.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2010). Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus. Mol. Ecol. 19(11): 2256-2268. dx.doi.org/10.1111/j.1365-294X.2010.04643.x, meer Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2010). Mito-nuclear discordance in the degree of population differentiation in a marine goby. Heredity 105(6): 532-542. dx.doi.org/doi:10.1038/hdy.2010.9, meer Massault, C.; Hellemans, B.; Louro, B.; Batargias, C.; Van Houdt, J.K.J.; Canario, A.; Volckaert, F.A.M.; Bovenhuis, H.; Haley, C.; de Koning, D. (2010). QTL for body weight, morphometric traits and stress response in European sea bass Dicentrarchus labrax. Anim. Genet. 41(4): 337-345. https://dx.doi.org/10.1111/j.1365-2052.2009.02010.x, meer Larmuseau, M.H.D.; Van Houdt, J.K.J.; Guelinckx, J.; Hellemans, B.; Volckaert, F.A.M.J. (2009). Distributional and demographic consequences of Pleistocene climate fluctuations for a marine demersal fish in the north-eastern Atlantic. J. Biogeogr. 39(6): 1138-1151. https://dx.doi.org/10.1111/j.1365-2699.2008.02072.x, meer Larmuseau, M.H.D.; Freyhof, J.; Volckaert, F.A.M.; Van Houdt, J.K.J. (2009). Matrilinear phylogeography and demographical patterns of Rutilus rutilus: implications for taxonomy and conservation. J. Fish Biol. 75(2): 332-353. https://dx.doi.org/10.1111/j.1095-8649.2009.02322.x, meer Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Ruddick, K.G.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2009). To see in different seas: spatial variation in the rhodopsin gene of the sand goby (Pomatoschistus minutus). Mol. Ecol. 18(20): 4227-4239. dx.doi.org/10.1111/j.1365-294X.2009.04331.x, meer Pujolar, J.M.; Maes, G.E.; Van Houdt, J.K.J.; Zane, L. (2009). Isolation and characterization of expressed sequence tag-linked microsatellite loci for the European eel (Anguilla anguilla). Mol. Ecol. Resour. 9(1): 233-235. dx.doi.org/10.1111/j.1755-0998.2008.02419.x, meer Van de Putte, A.P.; Van Houdt, J.K.J.; Maes, G.E.; Janko, K.; Koubbi, P.; Rock, J.; Volckaert, F.A.M. (2009). Species identification in the trematomid family using nuclear genetic markers. Polar Biol. 32(12): 1731-1741. https://dx.doi.org/10.1007/s00300-009-0672-8, meer Elmer, K.R.; Van Houdt, J.K.J.; Meyer, A.; Volckaert, F.A.M. (2008). Population genetic structure of North American burbot (Lota lota maculosa) across the Nearctic and at its contact zone with Eurasian burbot (Lota lota lota). Can. J. Fish. Aquat. Sci. 65(11): 2412-2426. dx.doi.org/10.1139/F08-173, meer Larmuseau, M.H.D.; Guelinckx, J.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2008). Fast PCR-RFLP method facilitates identification of Pomatoschistus species from the North Atlantic. J. Appl. Ichthyol. 24(3): 342-344. https://dx.doi.org/10.1111/j.1439-0426.2008.01059.x, meer Huyse, T.; Van Houdt, J.; Volckaert, F.A.M.J. (2004). Paleoclimatic history and vicariant speciation in the "sand goby" group (Gobiidae, Teleostei). Mol. Phylogenet. Evol. 32: 324-336. https://dx.doi.org/10.1016/j.ympev.2003.11.007, meer Van Houdt, J.K.; Hellemans, B.; Volckaert, F.A.M. (2003). Phylogenetic relationships among Palearctic and Nearctic burbot (Lota lota): Pleistocene extinctions and recolonization. Mol. Phylogenet. Evol. 29(3): 599-612. https://dx.doi.org/10.1016/S1055-7903(03)00133-7, meer
Peer reviewed publicaties (2) [show]
Larmuseau, M.H.D.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M.J. (2007). Development and characterization of nine polymorphic microsatellite markers in the sand goby Pomatoschistus minutus (Gobiidae). Mol. Ecol. Notes 7(1): 147-149. dx.doi.org/10.1111/j.1471-8286.2006.01559.x, meer Van Houdt, J.K.J.; Hellemans, B.; Van de Putte, A.; Koubbi, P.; Volckaert, F.A.M. (2006). Isolation and multiplex analysis of six polymorphic microsatellites in the Antarctic notothenioid fish, Trematomus newnesi. Mol. Ecol. Notes 6(1): 157-159. dx.doi.org/10.1111/j.1471-8286.2005.01174.x, meer
Boekhoofdstukken (7) [show]
Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Ruddick, K.G.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2009). To see in different seas: spatial variation in the rhodopsin gene of the sand goby (Pomatoschistus minutus), in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 115-141, meer Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M.J. (2009). Mito-nuclear discordance in the degree of population differentiation in a marine gorby Pomatoschistus minutus, in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 87-111, meer Larmuseau, M.H.D.; Vancampenhout, K.; Van Houdt, J.K.J.; Volckaert, F.A.M.J. (2009). Differential mode of adaptation to the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus, in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 143-163, meer Larmuseau, M.H.D.; Huyse, T.; Vancampenhout, K.; Van Houdt, J.K.J.; Volckaert, F.A.M.J. (2009). Insights in the adaptive evolution of the rhodopsin gene in the 'sand goby' group (Teleostei, Gobiidae), in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 167-187, meer Larmuseau, M.H.D.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M.J. (2009). Development and characterization of nine polymorphic microsatellite markers in the sand goby Pomatoschistus minutus (Gobiidae), in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 41-45, meer Larmuseau, M.H.D.; Guelinckx, J.; Hellemans, B.; Van Houdt, J.K.J.; Volckaert, F.A.M. (2009). Fast PCR-RFLP method facilitates identification of Pomatoschistus species from the North Atlantic, in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 35-45, meer Larmuseau, M.H.D.; Van Houdt, J.K.J.; Guelinckx, J.; Hellemans, B.; Volckaert, F.A.M.J. (2009). Distributional and demographic consequences of Pleistocene climate fluctuations for a marine demersal fish in the north-eastern Atlantic, in: Larmuseau, M.H.D. Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. pp. 49-86, meer
Abstracts (4) [show]
Larmuseau, M.; Van Houdt, J.K.J.; Hellemans, B.; Guelinckx, J.; Volckaert, F.A.M. (2008). Distributional and demographic consequences of Pleistocene glaciations for a marine demersal fish, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 1, meer Larmuseau, M.H.D.; Van Houdt, J.K.J.; Guelinckx, J.; Hellemans, B.; Volckaert, F.A.M. (2008). Deep genetic divergence and recent radiations in sand goby Pomatoschistus minutus along European coasts, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium, 29 February 2008: book of abstracts. VLIZ Special Publication, 40: pp. 53, meer Larmuseau, M.H.D.; Van Houdt, J.K.J.; Guelinckx, J.; Hellemans, B.; Volckaert, F.A.M.J. (2007). Exploring glacial and present evolutionary patterns of a marine goby, Pomatoschistus minutus, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 2 March 2007: book of abstracts. VLIZ Special Publication, 39: pp. 38, meer Larmuseau, M.H.D.; Van Houdt, J.K.J.; Maes, G.E.; Hellemans, B.; Volckaert, F.A.M.J. (2006). The genomics of local adaptation of a marine demersal fish, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 31 March 2006: book of abstracts. VLIZ Special Publication, 30: pp. 42, meer
Thesis (co-)promotor (2) [show]
Larmuseau, M.H.D (2009). Sea (in)sight: From phylogeographical insights to visual local adaption in marine gobies. PhD Thesis. Katholieke Universiteit Leuven - faculteit der toegepaste wetenschappen: Leuven. 258 pp., meer Larmuseau, M.H.D. (2009). Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. PhD Thesis. Katholieke Universiteit Leuven. Faculteit Wetenschappen: Leuven. ISBN 978-90-8649-272-5. 258 pp., meer