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IMIS - Marine Onderzoeksgroepen

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Dr Bolhuis, Henk
ORCID Personal home page ResearcherID

Institute
Publications (48)
Dataset

Koninklijk Nederlands Instituut voor Onderzoek der Zee; Marine Microbiology and Biogeochemistry (MMB), more

Function: Senior researcher
Direct contact at institute:
Tel.: +31-(0)113-57 73 74 78
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Data [show]
microcoleus nifH: Bolhuis H., Stal L.: Horizontal gene transfer of a nitrogen fixation gene cluster in Microcoleus chthonoplastes.Netherlands Institute of Ecology; Centre for Estuarine and Marine Ecology, Netherlands. Metadata available at http://mda.nioo.knaw.nl/imis.php?module=dataset&dasid=2151, more

A1 Publications (37) [show]
Caldara, M.; Bolhuis, H.; Marmiroli, M.; Marmiroli, N. (2025). Biofilm formation, modulation, and transcriptomic regulation under stress conditions in halomicronema sp. International Journal of Molecular Sciences 26(2): 673. https://dx.doi.org/10.3390/ijms26020673, more Sow, S.L.S.; van de Poll, W.H.; Eveleth, R.; Rich, J.; Ducklow, H.W.; Rozema, P.D.; Luria, C.; Bolhuis, H.; Meredith, M.P.; Amaral-Zettler, L.A.; Engelmann, J.C. (2025). Spatial and temporal variation of Antarctic microbial interactions: a study around the west Antarctic Peninsula. Environmental Microbiome 20(1): 21. https://dx.doi.org/10.1186/s40793-025-00663-z, more Bolhuis, H.; Grego, M. (2024). Cryopreservation and recovery of a complex hypersaline microbial mat community. Cryobiology 114: 104859. https://dx.doi.org/10.1016/j.cryobiol.2024.104859, more Meyer, C.; Jackson, V.L.N.; Harrison, K.; Fouskari, I.; Bolhuis, H.; Artzy-Randrup, Y.A.; Huisman, J.; Monier, A.; Brussaard, C.P.D. (2024). Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. ISME J. 18(1): wrae161. https://dx.doi.org/10.1093/ismejo/wrae161, more Piedade, G.; Schön, M.E.; Lood, C.; Fofanov, M.V.; Wesdorp, E.; Biggs, T.E.G.; Wu, L.; Bolhuis, H.; Fischer, M.G.; Yutin, N.; Dutilh, B.E.; Brussaard, C. (2024). Seasonal dynamics and diversity of Antarctic marine viruses reveal a novel viral seascape. Nature Comm. 15(1). https://dx.doi.org/10.1038/s41467-024-53317-y, more Zomer, A.; Ingham, C.J.; von Meijenfeldt, F. A.B.; Escobar Doncel, A.; van de Kerkhof, G.T.; Hamidjaja, R.; Schouten, S.; Schertel, L.; Müller, K. H.; Catón, L.; Hahnke, R.L.; Bolhuis, H.; Vignolini, S.; Dutilh, B.E. (2024). Structural color in the bacterial domain: The ecogenomics of a 2-dimensional optical phenotype. Proc. Natl. Acad. Sci. U.S.A. 121(29): e2309757121. https://dx.doi.org/10.1073/pnas.2309757121, more Ortmann, A.C.; Goodwin, K.D.; Bolhuis, H.; Groben, R.; Makhalanyane, T.P.; Bowman, J.; Robinson, S.; Thompson, F. (2023). Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic. Front. Mar. Sci. 10: 1327719. https://dx.doi.org/10.3389/fmars.2023.1327719, more Theirlynck, T.; Mendonça, I.R.W.; Engelen, A.H.; Bolhuis, H.; Collado-Vides, L.; van Tussenbroek, B.I.; García-Sánchez, M.; Zettler, E.R.; Muyzer, G.; Amaral-Zettler, L. (2023). Diversity of the holopelagic Sargassum microbiome from the Great Atlantic Sargassum Belt to coastal stranding locations. Harmful Algae 122: 102369. https://dx.doi.org/10.1016/j.hal.2022.102369, more Gévaert, F.; Gontharet, S.; Bolhuis, H.; Gommeaux, M.; Duong, G.; Goulard, F.; Courcot, L.; Denis, L. (2022). Biofilm dynamics and production in a tropical intertidal mudflat in French Guiana. Reg. environ. Change 23: 2. https://dx.doi.org/10.1007/s10113-022-01988-y, more Martinez Alvarez, L.; Bolhuis, H.; Mau, G.K.; Kok-Gan, C.; Sing, C.C.; Mac Cormack, W.; Ruberto, L. (2022). Identification of key bacterial players during successful full-scale soil field bioremediation in Antarctica. Int. Biodeterior. Biodegrad. 168: 105354. https://dx.doi.org/10.1016/j.ibiod.2021.105354, more Rosselli, R.; López-Pérez, M.; Martin-Cuadrado, A.-B.; Rodríguez-Valera, F.; Bolhuis, H. (2022). Differences in gene expression patterns between cultured and natural Haloquadratum walsbyi ecotypes. Front. Microbiol. 13: 1044446. https://dx.doi.org/10.3389/fmicb.2022.1044446, more Hörnlein, C.; Confurius-Guns, V.; Grego, M.; Stal, L.J.; Bolhuis, H. (2020). Circadian clock-controlled gene expression in co-cultured, mat-forming cyanobacteria. NPG Scientific Reports 10(1). https://dx.doi.org/10.1038/s41598-020-69294-3, more Popall, R.M.; Bolhuis, H.; Muyzer, G.; Sánchez-Román, M. (2020). Stromatolites as biosignatures of atmospheric oxygenation: Carbonate biomineralization and UV-C resilience in a Geitlerinema sp. - dominated culture. Front. Microbiol. 11: article 948. https://dx.doi.org/10.3389/fmicb.2020.00948, more Cardoso, D.C.; Cretoiu, M.S.; Stal, L.J.; Bolhuis, H. (2019). Seasonal development of a coastal microbial mat. NPG Scientific Reports 9: 9035. https://dx.doi.org/10.1038/s41598-019-45490-8, more Stal, L.J.; Bolhuis, H.; Cretoiu, M.S. (2019). Phototrophic marine benthic microbiomes: the ecophysiology of these biological entities. Environ. Microbiol. 21(5): 1529-1551. https://dx.doi.org/10.1111/1462-2920.14494, more Dijkhuizen, L.W.; Brouwer, P.; Bolhuis, H.; Reichart, G.-J.; Koppers, N.; Huettel, B.; Bolger, A.M.; Li, F.-W.; Cheng, S.; Liu, X.; Wong, G.K.-S.; Pryer, K.; Weber, A.; Bräutigam, A.; Schluepmann, H. (2018). Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N₂ but may denitrify. New Phytol. 217(1): 453-466. https://dx.doi.org/10.1111/nph.14843, more Hedayatkhah, A.; Cretoiu, M.S.; Emtiazi, G.; Stal, L.J.; Bolhuis, H. (2018). Bioremediation of chromium contaminated water by diatoms with concomitant lipid accumulation for biofuel production. J. Environ. Manage. 227: 313-320. https://doi.org/10.1016/j.jenvman.2018.09.011, more Hörnlein, C.; Confurius-Guns, V.; Stal, L.J.; Bolhuis, H. (2018). Daily rhythmicity in coastal microbial mats. npj Biofilms and Microbiomes 4: 11. https://doi.org/10.1038/s41522-018-0054-5, more Ismail, A.; Ktari, L.; Ahmed, M.; Bolhuis, H.; Bouhaouala-Zahar, B.; Stal, L.J.; Boudabbous, A.; El Bour, M. (2018). Heterotrophic bacteria associated with the green alga Ulva rigida: identification and antimicrobial potential. J. Appl. Phycol. 30(5): 2883-2899. https://doi.org/10.1007/s10811-018-1454-x, more Bolhuis, H.; Martín-Cuadrado, A.B.; Rosselli, R.; Pašic, L.; Rodriguez-Valera, F (2017). Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface. BMC Genom. 18(1): 14. https://dx.doi.org/10.1186/s12864-017-3892-2, more Cardoso, D.C.; Sandionigi, A.; Cretoiu, M.S; Casiraghi, M.; Stal, L.; Bolhuis, H. (2017). Comparison of the active and resident community of a coastal microbial mat. NPG Scientific Reports 7: 2969. https://dx.doi.org/10.1038/s41598-017-03095-z, more Naghoni, A.; Emtiazi, G.; Amoozegar, M.A.; Cretoiu, M.S.; Stal, L.J.; Etemadifar, Z.; Shahzadeh Fazeli, S.A.; Bolhuis, H. (2017). Microbial diversity in the hypersaline Lake Meyghan, Iran. NPG Scientific Reports 7(1): 11522. https://dx.doi.org/10.1038/s41598-017-11585-3, more Rozema, P.D.; Biggs, T.; Sprong, P.A.A.; Buma, A.G.J.; Venables, H.J.; Evans, C.; Meredith, M.P.; Bolhuis, H. (2017). Summer microbial community composition governed by upper-ocean stratification and nutrient availability in northern Marguerite Bay, Antarctica. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 139: 151-166. https://dx.doi.org/10.1016/j.dsr2.2016.11.016, more Ismail, A.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L.J.; Cretoiu, M.S.; El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Front. Microbiol. 7: 1072. dx.doi.org/10.3389/fmicb.2016.01072, more Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763. dx.doi.org/10.1007/s00300-015-1866-x, more Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments. Front. Microbiol. 6: 738. dx.doi.org/10.3389/fmicb.2015.00738, more Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat. Front. Microbiol. 6: 1367. dx.doi.org/10.3389/fmicb.2015.01367, more Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Denitrification and the denitrifier community in coastal microbial mats. FEMS Microbiol. Ecol. 91(3): 1-11. dx.doi.org/10.1093/femsec/fiu033, more Zenke, R.; von Gronau, S.; Bolhuis, H.; Gruska, M.; Pfeiffer, F; Oesterhelt, D. (2015). Fluorescence microscopy visualization of halomucin, a secreted 927 kDa protein surrounding Haloquadratum walsbyi cells. Front. Microbiol. 6: article 249. dx.doi.org/10.3389/fmicb.2015.00249, more Bolhuis, H.; Cretoiu, M.S.; Stal, L.J. (2014). Molecular ecology of microbial mats. FEMS Microbiol. Ecol. 90(2): 335-350, more Boschker, H.T.S.; Vasquez-Cardenas, D.; Bolhuis, H.; Moerdijk-Poortvliet, T.C.W.; Moodley, L. (2014). Chemoautotrophic Carbon Fixation Rates and Active Bacterial Communities in Intertidal Marine Sediments. PLoS One 9(7): e101443 1-12. http://dx.doi.org/10.1371/journal.pone.0101443, more Moerdijk-Poortvliet, T.C.W.; Brasser, J.; de Ruiter, G.; Houtekamer, M.; Bolhuis, H.; Stal, L.J.; Boschker, H.T.S. (2014). A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry. Rapid Comm. Mass Spectrom. 28(12): 1401-1411. dx.doi.org/10.1002/rcm.6919, more Piquet, A.M.-T.; van de Poll, W.H.; Visser, R.J.W.; Wiencke, C.; Bolhuis, H.; Buma, A.G.J. (2014). Springtime phytoplankton dynamics in Arctic Krossfjorden and Kongsfjorden (Spitsbergen) as a function of glacier proximity. Biogeosciences 11(8): 2263-2279. dx.doi.org/10.5194/bg-11-2263-2014, more Boekema, E.J.; Scheffers, D.-J.; van Bezouwen, L.S.; Bolhuis, H.; Folea, I.M. (2013). Focus on Membrane Differentiation and Membrane Domains in the Prokaryotic Cell. J. Mol. Microbiol. Biotechnol. 23(4-5): 345-356. dx.doi.org/10.1159/000351361, more Bolhuis, H.; Fillinger, L.; Stal, L.J. (2013). Coastal Microbial Mat Diversity along a Natural Salinity Gradient. PLoS One 8(5). dx.doi.org/10.1371/journal.pone.0063166, more Voss, B.; Bolhuis, H.; Fewer, D.P.; Kopf, M.; Möke, F.; Haas, F.; El-Shehawy, R.; Hayes, P.; Bergman, B.; Sivonen, K.; Dittmann, E.; Scanlan, D.J.; Hagemann, M.; Stal, L.J.; Hess, W.R. (2013). Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis. PLoS One 8(3). dx.doi.org/10.1371/journal.pone.0060224, more Ismail-Ben Ali, A.; El Bour, M.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L. (2012). Jania rubens-associated bacteria: molecular identification and antimicrobial activity. J. Appl. Phycol. 24(3): 525-534. dx.doi.org/10.1007/s10811-011-9758-0, more
Peer reviewed publications (4) [show]
Thompson, C.; Ortmann, A.C.; Bolhuis, H.; Makhalanyane, T.P.; Thompson, F. (2024). Harnessing marine microbiomes to develop a sustainable, all‐Atlantic bioeconomy. International Journal of Advanced Life Sciences 3(2): 163-166. https://dx.doi.org/10.1002/mlf2.12124, more Druce, E.; Grego, M.; Bolhuis, H.; Johnes, P.J.; Sánchez-Baracaldo, P. (2023). Draft Genome Sequences of Synechococcus sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater Syn/Pro Clade Picocyanobacteria. Journal of Genomics 11: 26-36. https://dx.doi.org/10.7150/jgen.81013, more Boden, J.S.; Grego, M.; Bolhuis, H.; Sánchez-Baracaldo, P. (2021). Draft genome sequences of three filamentous cyanobacteria isolated from brackish habitats. Journal of Genomics 9: 20-25. https://doi.org/10.7150/jgen.53678, more Bolhuis, H.; Schluepmann, H.; Kristalijn, J.; Sulaiman, Z.; Marshall, D.J. (2014). Molecular analysis of bacterial diversity in mudflats along the salinity gradient of an acidified tropical Bornean estuary (South East Asia). Aquatic Biosystems 10(10): 13 pp. dx.doi.org/10.1186/2046-9063-10-10, more
Book chapters (4) [show]
Hörnlein, C.; Bolhuis, H. (2021). Daily rhythmicity in coastal microbial mats, in: Johnson, C.H. et al. Circadian rhythms in bacteria and microbiomes. . https://dx.doi.org/10.1007/978-3-030-72158-9_19, more Stal, L.J.; Bolhuis, H.; Cretoiu, M.S. (2017). Phototrophic Microbial Mats, in: Hallenbeck, P.C. Modern Topics in the Phototrophic Prokaryotes : environmental and applied aspects . pp. 295-321. https://dx.doi.org/10.1007%2F978-3-319-46261-5_9, more Bolhuis, H.; Cretoiu, M.S. (2016). What is so special about marine microorganisms? Introduction to the marine microbiome - from diversity to biotechnological potential, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 3-20. dx.doi.org/10.1007/978-3-319-33000-6_1, more Rodríguez-Valera, F.; Martin-Cuadrado, A.-B.; Bolhuis, H. (2016). Haloquadratum, in: Whitman, W.B. (Ed.) Bergey's Manual of Systematics of Archaea and Bacteria. pp. 1-11. https://dx.doi.org/10.1002/9781118960608.gbm01348, more
Reports (2) [show]
Bolhuis, H.; Buttigieg, P.L.; Goodwin, K.; Groben, R.; Iudicone, D.; Lacoursière-Roussel, A.; Pesant, S.; Robinson, S.; Björnsson, S.; Erlendsson, L.S.; Rae, M. (2020). Atlantic Ocean Research Alliance - Marine Microbiome Roadmap. Atlantic Ocean Research Alliance (AORA): [s.l.]. https://doi.org/10.5281/zenodo.3632526, more Philippart, K.; Blauw, A.; Bolhuis, H.; Brandenburg, K.; Brussaard, C.; Gerkema, T.; Herman, P.; Hommersom, A.; Jacobs, P.; Laanen, M.; van Leeuwe, M.A.; van den Oever, A.; Peters, S.; Philippart, M.; Pitarch, J.; Prins, T.; Ruddick, K.; Spaias, L.; van de Waal, D.; Van der Zande, D.; Zuur, A. (2020). Quick scan zeeschuim. NIOZ/Bureau Waardenburg/Deltares/Highland Statistics/CNR/KBIN/NIOO-KNAW/Rijkswaterstaat (RWS-WVL)/Technische Universiteit Delft/Universiteit van Amsterdam/Universiteit Utrecht/Rijksuniversiteit Groningen/Water Insight BV: Texel. 51 pp., more
Thesis (co-)promotor [show]
Fan, H. (2016). Investigations on the nitrogen cycle in the coastal North Sea. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-32-1. 156 pp. hdl.handle.net/11245/1.522126, more